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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dbr NAP Glyoxylate reductase 1.1.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dbr NAPGlyoxylate reductase 1.1.1.26 1.206
2dbq NAPGlyoxylate reductase 1.1.1.26 0.990
2dbz NAPGlyoxylate reductase 1.1.1.26 0.872
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.829
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.743
4xyb NDPFormate dehydrogenase / 0.724
4weq NAPNAD-dependent dehydrogenase / 0.723
4z0p NDPNAD-dependent dehydrogenase / 0.722
2g76 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.717
2ekl NADD-3-phosphoglycerate dehydrogenase / 0.716
3kbo NDPGlyoxylate/hydroxypyruvate reductase A / 0.708
3kb6 NADD-lactate dehydrogenase / 0.704
4e5k NADPhosphonate dehydrogenase 1.20.1.1 0.703
1zh8 NAPUncharacterized protein / 0.688
2gsd NADFormate dehydrogenase / 0.686
3wbf NAPMeso-diaminopimelate D-dehydrogenase / 0.684
4jk3 NADUncharacterized protein / 0.684
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.681
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.681
4j43 NADUncharacterized protein / 0.680
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.670
4nu5 NADPhosphonate dehydrogenase 1.20.1.1 0.669
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.668
5bsg NAPPyrroline-5-carboxylate reductase / 0.666
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.664
4j49 NAIUncharacterized protein / 0.664
4e5p NADPhosphonate dehydrogenase 1.20.1.1 0.662
2nad NADFormate dehydrogenase / 0.660
4j49 NADUncharacterized protein / 0.660
4jbi NDPAlcohol dehydrogenase (Zinc) / 0.660
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.659
5bqf NAPProbable hydroxyacid dehydrogenase protein / 0.659
2gcg NDPGlyoxylate reductase/hydroxypyruvate reductase 1.1.1.79 0.657
3n7u NADFormate dehydrogenase, chloroplastic/mitochondrial / 0.655
5a02 NAPGlucose-fructose oxidoreductase / 0.654
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.650