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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d3u CCT Polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d3u CCTPolyprotein / 0.984
3mf5 HJZGenome polyprotein 2.7.7.48 0.825
4eo8 0S3Genome polyprotein 2.7.7.48 0.823
2gir NN3Genome polyprotein 2.7.7.48 0.814
4ju6 1O6Genome polyprotein 2.7.7.48 0.788
4ju7 1O6Genome polyprotein 2.7.7.48 0.788
4jju 1MBGenome polyprotein 2.7.7.48 0.782
4j0a 1JLGenome polyprotein 2.7.7.48 0.747
4jtz 1NWGenome polyprotein 2.7.7.48 0.738
4ju4 1O3Genome polyprotein 2.7.7.48 0.725
4jvq 1MLGenome polyprotein 2.7.7.48 0.712
4ju3 1O1Genome polyprotein 2.7.7.48 0.706
2o5d VR1Genome polyprotein 2.7.7.48 0.689
4ju1 1NZGenome polyprotein 2.7.7.48 0.677
4jtw 1NUGenome polyprotein 2.7.7.48 0.673
2hwh RNAGenome polyprotein 2.7.7.48 0.663