Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cle F6F Tryptophan synthase alpha chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cle F6FTryptophan synthase alpha chain / 1.055
2clf F6FTryptophan synthase alpha chain / 0.847
4y6g F6FTryptophan synthase alpha chain / 0.824
2clm F6FTryptophan synthase alpha chain / 0.823
4zqc F6FTryptophan synthase alpha chain / 0.815
4xug F9FTryptophan synthase alpha chain / 0.763
2rh9 IGPTryptophan synthase alpha chain / 0.718
1qoq IGPTryptophan synthase alpha chain / 0.681
2rhg IGPTryptophan synthase alpha chain / 0.672
1k8y 13PTryptophan synthase alpha chain / 0.659