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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cft PLP Pyridoxal phosphate phosphatase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cft PLPPyridoxal phosphate phosphatase / 0.998
3opx U5PSuppressor of disruption of TFIIS / 0.693
2olq ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.663
2xjc 5GPCytosolic purine 5'-nucleotidase 3.1.3.5 0.663
2x2r ADPKinesin-like protein KIF11 / 0.657
5i67 GDPPhosphoenolpyruvate carboxykinase [GTP] / 0.655
3bb3 GDPTranslocase of chloroplast 33, chloroplastic 3.6.5 0.652
4idp GNPAtlastin-1 3.6.5 0.652
1w0k ADPATP synthase subunit alpha, mitochondrial / 0.651
1w0k ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.651
4obe GDPGTPase KRas / 0.651
1w1w AGSStructural maintenance of chromosomes protein 1 / 0.650
2dr3 ADPUPF0273 protein PH0284 / 0.650
4epw GDPGTPase KRas / 0.650