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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c9b PUG 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c9b PUG6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.988
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.844
2c92 TP66,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.844
1w19 T5P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.759
1w19 T4P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.754
1w29 TS16,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.747
2a57 CRM6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.736
1w19 T1P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.731
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.724
2o6h INI6,7-dimethyl-8-ribityllumazine synthase 1 2.5.1.78 0.719
1kyy INI6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.714
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.694
4kq6 DLZ6,7-dimethyl-8-ribityllumazine synthase / 0.691
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.686
4iil RBFMembrane lipoprotein TpN38(b) / 0.673
1nqu RDL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.653
2cbj OANO-GlcNAcase NagJ / 0.653
1nqx RLP6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.652