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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c6m DT5 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.879
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.772
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.752
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.712
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.696
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.680
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.675
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.673
2r3f SC8Cyclin-dependent kinase 2 2.7.11.22 0.663
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.661
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.653
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.653
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.652