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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c4i BTN Avidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c4i BTNAvidin / 1.047
4bcs BTNAvidin-related protein 4/5 / 0.920
1y52 BTNAvidin-related protein 4/5 / 0.906
1swe BTNStreptavidin / 0.904
2izg BTNStreptavidin / 0.880
3vgw NVZAvidin / 0.874
4gda BTNStreptavidin / 0.872
4yvb BTNStreptavidin / 0.867
2rtf BTNStreptavidin / 0.861
2rtg BTNStreptavidin / 0.855
4bj8 BTNAvidin / 0.848
3vhi VHIAvidin / 0.840
2jgs BTNAvidin / 0.835
2rtd BTNStreptavidin / 0.835
3rdo BTNStreptavidin / 0.835
2izf BTNStreptavidin / 0.833
3wyp BSOStreptavidin / 0.833
4z28 BTNHoefavidin / 0.832
2rte BTNStreptavidin / 0.831
4bx7 B4FStreptavidin / 0.831
1nqm BTNStreptavidin / 0.828
2izj BTNStreptavidin / 0.822
3t2w BTNAvidin/streptavidin / 0.821
3rdq DTBStreptavidin / 0.820
3ry2 BTNStreptavidin / 0.813
1swr BTNStreptavidin / 0.809
1mk5 BTNStreptavidin / 0.806
2avi BTNAvidin / 0.806
1n43 BTNStreptavidin / 0.805
4dne DTBStreptavidin / 0.805
1stp BTNStreptavidin / 0.804
2y3f BTNStreptavidin / 0.804
1lcw SHMStreptavidin / 0.802
1mep BTNStreptavidin / 0.800
1n9m BTNStreptavidin / 0.800
1swg BTNStreptavidin / 0.796
1rxj BNIStreptavidin / 0.795
2uz2 BTNAvd protein / 0.795
1swt BTNStreptavidin / 0.792
3wyq BTNStreptavidin / 0.792
1swp BTNStreptavidin / 0.791
3ew2 BTNHypothetical conserved protein / 0.789
2uyw BTNAvd protein / 0.784
2izi BTNStreptavidin / 0.780
1avd BTNAvidin / 0.770
4gd9 BTNStreptavidin / 0.767
3wzn BTNStreptavidin / 0.754
1swd BTNStreptavidin / 0.753
4ggz BTNBll1558 protein / 0.753
3vhm NPKAvidin / 0.745
2rto IMIStreptavidin / 0.742
1nc9 IMIStreptavidin / 0.740
2zsc BTNTamavidin2 / 0.733
1luq BTNStreptavidin / 0.728
2rtp IMIStreptavidin / 0.723
1swn BTNStreptavidin / 0.718
2rtl IMIStreptavidin / 0.715
1ndj BTNStreptavidin / 0.707
2rtr IMIStreptavidin / 0.703
2fhn BNIAvidin-related protein 4/5 / 0.697
2fhl BNIAvidin-related protein 4/5 / 0.694
3vhh VHHAvidin / 0.691
1df8 BTNStreptavidin / 0.671
2rti GLLStreptavidin / 0.664
1i9h BNIStreptavidin / 0.661
2nmt NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.660
1ldq SHMAvidin / 0.657
2rtn IMIStreptavidin / 0.656
2izl IMIStreptavidin / 0.654