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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b51 UTP RNA editing complex protein MP57

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b51 UTPRNA editing complex protein MP57 / 1.171
2b56 UTPRNA editing complex protein MP57 / 1.125
2ikf UTPPoly(A) polymerase, putative / 0.950
2q0c CTPPoly(A) polymerase, putative / 0.830
3hiy UTPUncharacterized protein / 0.786
4xj4 3ATCyclic GMP-AMP synthase / 0.783
2q66 ATPPoly(A) polymerase 2.7.7.19 0.768
4xj3 GTPCyclic GMP-AMP synthase / 0.755
4fhp UTPTerminal uridylyltransferase cid1 / 0.748
2q0f UTPPoly(A) polymerase, putative / 0.741
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.727
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.726
4fj5 DTPDNA-directed DNA polymerase / 0.715
4u03 GTPCyclic GMP-AMP synthase / 0.715
4k97 ATPCyclic GMP-AMP synthase / 0.709
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.702
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.698
3m0e ATPTranscriptional regulator (NtrC family) / 0.689
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.686
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.680
4pb2 5UDNucleoside permease / 0.677
2q0d ATPPoly(A) polymerase, putative / 0.676
1zyd ATPeIF-2-alpha kinase GCN2 / 0.673
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.671
1qtm TTPDNA polymerase I, thermostable 2.7.7.7 0.670
4fjh DGTDNA-directed DNA polymerase / 0.669
4fjl DGTDNA-directed DNA polymerase / 0.669
4fh5 UTPTerminal uridylyltransferase cid1 / 0.666
4m3t ATPDNA-directed DNA polymerase / 0.666
3t3f N5PDNA polymerase I, thermostable 2.7.7.7 0.663
4txz G2PCyclic GMP-AMP synthase / 0.663
2zh6 ATPCCA-adding enzyme 2.7.7.72 0.662
3ova APCCCA-adding enzyme 2.7.7.72 0.662
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.661
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.661
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.660
4dto DCPDNA-directed DNA polymerase / 0.660
3au2 DGTDNA polymerase beta family (X family) / 0.657
1day GNPCasein kinase II subunit alpha 2.7.11.1 0.655
2hgs ADPGlutathione synthetase 6.3.2.3 0.655
2q0g UPUPoly(A) polymerase, putative / 0.655
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.654
3sup DCPDNA-directed DNA polymerase / 0.653
3g6x DGTDNA polymerase iota 2.7.7.7 0.652
3q23 G2PVirion DNA-directed RNA polymerase / 0.652
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.651
4ehy ADPTetraacyldisaccharide 4'-kinase / 0.651
4fvq ATPTyrosine-protein kinase JAK2 / 0.651
2jj1 ADPATP synthase subunit alpha, mitochondrial / 0.650
2jj1 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.650