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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2az3 CDP Nucleoside diphosphate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2az3 CDPNucleoside diphosphate kinase / 1.031
4fkx CDPNucleoside diphosphate kinase / 0.798
4uoh ADPNucleoside diphosphate kinase / 0.786
2hvd ADPNucleoside diphosphate kinase A 2.7.4.6 0.756
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.738
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.731
2hve ADPNucleoside diphosphate kinase A 2.7.4.6 0.718
1zs6 ADPNucleoside diphosphate kinase 3 2.7.4.6 0.710
4uof DATNucleoside diphosphate kinase / 0.700
1lwx AZDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.695
1nue GDPNucleoside diphosphate kinase B 2.7.4.6 0.692
4uog YYYNucleoside diphosphate kinase / 0.691
2dxf GNPNucleoside diphosphate kinase 2.7.4.6 0.677
3bbf GDPNucleoside diphosphate kinase B 2.7.4.6 0.671
4cdm FADDeoxyribodipyrimidine photolyase / 0.671
1xs4 DCPdCTP deaminase / 0.668
4rpg GDUUDP-galactopyranose mutase 5.4.99.9 0.665
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.659
1xjn CDPVitamin B12-dependent ribonucleotide reductase / 0.653
4fhp UTPTerminal uridylyltransferase cid1 / 0.653