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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2anm CDO Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2anm CDOProthrombin 3.4.21.5 1.096
2znk 31UProthrombin 3.4.21.5 0.953
2a2x NA9Prothrombin 3.4.21.5 0.939
4ban M6SProthrombin 3.4.21.5 0.888
2zfq 45UProthrombin 3.4.21.5 0.887
2zg0 50UProthrombin 3.4.21.5 0.884
4bao MVFProthrombin 3.4.21.5 0.884
2zhq 27UProthrombin 3.4.21.5 0.881
4bah MELProthrombin 3.4.21.5 0.881
1k22 MELProthrombin 3.4.21.5 0.875
2zhe 13UProthrombin 3.4.21.5 0.871
4bam MM9Prothrombin 3.4.21.5 0.869
2zi2 24UProthrombin 3.4.21.5 0.861
2ziq 26UProthrombin 3.4.21.5 0.855
4baq M4ZProthrombin 3.4.21.5 0.848
2zda 32UProthrombin 3.4.21.5 0.844
3utu 1TSProthrombin 3.4.21.5 0.841
1o0d 163Prothrombin 3.4.21.5 0.838
1ypl RA8Prothrombin 3.4.21.5 0.820
2zfr 46UProthrombin 3.4.21.5 0.803
4bak M67Prothrombin 3.4.21.5 0.802
3biu 10UProthrombin 3.4.21.5 0.780
1nzq 162Prothrombin 3.4.21.5 0.777
1ypk CCRProthrombin 3.4.21.5 0.773
2bdy UNBProthrombin 3.4.21.5 0.767
5cmx 0G6Prothrombin 3.4.21.5 0.767
1c4u IH1Prothrombin 3.4.21.5 0.762
1c4v IH2Prothrombin 3.4.21.5 0.756
1ta6 177Prothrombin 3.4.21.5 0.753
1riw OSCProthrombin 3.4.21.5 0.750
1wtg 3BPCoagulation factor VII 3.4.21.21 0.744
1ta2 176Prothrombin 3.4.21.5 0.743
1kts C24Prothrombin 3.4.21.5 0.741
2zhf 49UProthrombin 3.4.21.5 0.738
4e7r 0NWProthrombin 3.4.21.5 0.734
3p17 99PProthrombin 3.4.21.5 0.731
4ayy 9MXProthrombin 3.4.21.5 0.731
2zgx 29UProthrombin 3.4.21.5 0.730
1ypg UIRProthrombin 3.4.21.5 0.729
2zhw 12UProthrombin 3.4.21.5 0.725
1wqv PSMCoagulation factor VII 3.4.21.21 0.718
3qwc 98PProthrombin 3.4.21.5 0.717
2zff 53UProthrombin 3.4.21.5 0.716
3qto 10PProthrombin 3.4.21.5 0.713
1ypm RA4Prothrombin 3.4.21.5 0.711
2zdv 37UProthrombin 3.4.21.5 0.710
3eq0 2TSProthrombin 3.4.21.5 0.708
1k21 IGNProthrombin 3.4.21.5 0.707
4ayv 9MQProthrombin 3.4.21.5 0.707
1sl3 170Prothrombin 3.4.21.5 0.703
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.703
1ype UIPProthrombin 3.4.21.5 0.702
4az2 9MUProthrombin 3.4.21.5 0.698
1vzq SHYProthrombin 3.4.21.5 0.691
1ypj UIBProthrombin 3.4.21.5 0.691
2zfp 19UProthrombin 3.4.21.5 0.690
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.688
1wv7 5PICoagulation factor VII 3.4.21.21 0.688
1nt1 T76Prothrombin 3.4.21.5 0.687
3f68 91UProthrombin 3.4.21.5 0.686
3dhk 23UProthrombin 3.4.21.5 0.682
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.681
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.677
2zc9 22UProthrombin 3.4.21.5 0.673
3qtv 06PProthrombin 3.4.21.5 0.673
3dux 64UProthrombin 3.4.21.5 0.671
4ax9 N5NProthrombin 3.4.21.5 0.670
2zgb 21UProthrombin 3.4.21.5 0.669
2v3h I25Prothrombin 3.4.21.5 0.667
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.666
1z71 L17Prothrombin 3.4.21.5 0.663
1lpk CBBCoagulation factor X 3.4.21.6 0.662
1d9i 00PProthrombin 3.4.21.5 0.661
3plp BBACationic trypsin 3.4.21.4 0.655
2gde SN3Prothrombin 3.4.21.5 0.654
2cn0 F25Prothrombin 3.4.21.5 0.653
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.651