Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2aly YSA Phenylalanine--tRNA ligase alpha subunit 6.1.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2aly YSAPhenylalanine--tRNA ligase alpha subunit 6.1.1.20 1.124
1fyf SSAThreonine--tRNA ligase 6.1.1.3 0.774
1b7y FYAPhenylalanine--tRNA ligase alpha subunit 6.1.1.20 0.745
3e9h KAALysine--tRNA ligase 6.1.1.6 0.724
2q7h YLYPyrrolysine--tRNA ligase / 0.705
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.700
3vqv ANPPyrrolysine--tRNA ligase / 0.695
4bwa N0BPyrrolysine--tRNA ligase / 0.690
1nj6 A5AProline--tRNA ligase / 0.687
3mey ATPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.684
1nj5 P5AProline--tRNA ligase / 0.671
3bju ATPLysine--tRNA ligase 6.1.1.6 0.671
3a5z KAAElongation factor P--(R)-beta-lysine ligase / 0.668
2i4n 5CAProline--tRNA ligase 6.1.1.15 0.660
3a5y KAAElongation factor P--(R)-beta-lysine ligase / 0.659
1c0a AMOAspartate--tRNA ligase / 0.658