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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2aba STR Pentaerythritol tetranitrate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2aba STRPentaerythritol tetranitrate reductase / 1.035
1h60 STRPentaerythritol tetranitrate reductase / 0.829
2aa6 STRMineralocorticoid receptor / 0.733
1h62 ANBPentaerythritol tetranitrate reductase / 0.728
1h61 PDNPentaerythritol tetranitrate reductase / 0.706
2aa5 STRMineralocorticoid receptor / 0.699
1ya3 STRMineralocorticoid receptor / 0.698
5hgc HCYUncharacterized protein / 0.680
1d2s DHTSex hormone-binding globulin / 0.674
1kdk DHTSex hormone-binding globulin / 0.672
3mne DEXGlucocorticoid receptor / 0.671
1f5f DHTSex hormone-binding globulin / 0.669
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.669
3uzz TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.668
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.664
3mnp DEXGlucocorticoid receptor / 0.664
2w8y NDRProgesterone receptor / 0.663
3w5r LOAVitamin D3 receptor / 0.661
3w5q 3KLVitamin D3 receptor / 0.659
3zuy TCHTransporter / 0.657
3tc5 3T5Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 5.2.1.8 0.655
3eqm ASDAromatase 1.14.14.14 0.653
3s79 ASDAromatase 1.14.14.14 0.652
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.651
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.650