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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2aa0 MTP Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2aa0 MTPAdenosine kinase 2.7.1.20 0.921
2ab8 ACPAdenosine kinase 2.7.1.20 0.765
4e5i 0N9Polymerase acidic protein / 0.744
5c3z ACPRibokinase / 0.736
5c40 ACPRibokinase / 0.735
1lik ADNAdenosine kinase 2.7.1.20 0.733
3otx AP5Adenosine kinase, putative / 0.688
4o1g AGSAdenosine kinase 2.7.1.20 0.677
5c41 ACPRibokinase / 0.677
5c3y AN2Ribokinase / 0.664
4e5f 0N7Polymerase acidic protein / 0.660
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.657
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.657
4s1h ADPPyridoxal kinase, putative / 0.654