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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zs6 ADP Nucleoside diphosphate kinase 3 2.7.4.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zs6 ADPNucleoside diphosphate kinase 3 2.7.4.6 1.009
4uoh ADPNucleoside diphosphate kinase / 0.866
4uof DATNucleoside diphosphate kinase / 0.850
2hve ADPNucleoside diphosphate kinase A 2.7.4.6 0.844
4uog YYYNucleoside diphosphate kinase / 0.817
2hvd ADPNucleoside diphosphate kinase A 2.7.4.6 0.804
1nue GDPNucleoside diphosphate kinase B 2.7.4.6 0.802
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.800
3bbf GDPNucleoside diphosphate kinase B 2.7.4.6 0.800
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.785
4fkx CDPNucleoside diphosphate kinase / 0.771
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.752
3ngu ADPNucleoside diphosphate kinase / 0.733
2dxf GNPNucleoside diphosphate kinase 2.7.4.6 0.715
2az3 CDPNucleoside diphosphate kinase / 0.710
4hr2 ADPNucleoside diphosphate kinase / 0.683
3q8u ADPNucleoside diphosphate kinase / 0.668
2ydo ADNAdenosine receptor A2a / 0.660
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.659
2zbv ADNUncharacterized protein / 0.659