Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zgv 501 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zgv 501Prothrombin 3.4.21.5 0.909
4e5i 0N9Polymerase acidic protein / 0.744
2zfq 45UProthrombin 3.4.21.5 0.690
2znk 31UProthrombin 3.4.21.5 0.686
3egk M18Prothrombin 3.4.21.5 0.675
4loy 6XSProthrombin 3.4.21.5 0.669
2zgb 21UProthrombin 3.4.21.5 0.665
1uvs I11Prothrombin 3.4.21.5 0.661
2zhe 13UProthrombin 3.4.21.5 0.658
1ta2 176Prothrombin 3.4.21.5 0.655
2zg0 50UProthrombin 3.4.21.5 0.652