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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zgi 382 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zgi 382Prothrombin 3.4.21.5 0.920
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1z71 L17Prothrombin 3.4.21.5 0.720
1sl3 170Prothrombin 3.4.21.5 0.689
3c1k T15Prothrombin 3.4.21.5 0.664
4e5f 0N7Polymerase acidic protein / 0.660
1mu6 CDAProthrombin 3.4.21.5 0.659
1ypm RA4Prothrombin 3.4.21.5 0.658
4e7r 0NWProthrombin 3.4.21.5 0.658
3c27 DKKProthrombin 3.4.21.5 0.651