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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z5w GTP Tubulin gamma-1 chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1z5w GTPTubulin gamma-1 chain / 1.188
4o4l GTPTubulin alpha-1B chain / 0.757
3cb2 GDPTubulin gamma-1 chain / 0.739
1z5v GSPTubulin gamma-1 chain / 0.737
4ihj GTPTubulin alpha-1B chain / 0.734
4ffb GTPTubulin alpha-1 chain / 0.725
5jqg GTPTubulin alpha-1B chain / 0.721
4tuy GTPTubulin alpha-1B chain / 0.713
4iij GTPTubulin alpha-1B chain / 0.704
4zol GTPTubulin alpha-1B chain / 0.698
3ryh GTPTubulin alpha chain / 0.695
3zid GDPTubulin-like protein CetZ / 0.695
4tv9 GTPTubulin alpha-1B chain / 0.688
4u3j GTPTubulin beta chain / 0.682
4b45 GSPTubulin-like protein CetZ2 / 0.679
5itz GTPTubulin alpha-1B chain / 0.669
5la6 GDPTubulin beta-2B chain / 0.668
4yj2 GTPTubulin alpha-1B chain / 0.667
4f6r GDPTubulin beta chain / 0.665
4o4i GTPTubulin alpha-1B chain / 0.664
4wbn GTPTubulin alpha-1B chain / 0.658
3wfj NAD2-dehydropantoate 2-reductase / 0.656
5la6 GTPTubulin alpha-1B chain / 0.654