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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z5v GSP Tubulin gamma-1 chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1z5v GSPTubulin gamma-1 chain / 1.191
4tuy GTPTubulin alpha-1B chain / 0.803
4tv9 GTPTubulin alpha-1B chain / 0.800
4ihj GTPTubulin alpha-1B chain / 0.778
5la6 GTPTubulin alpha-1B chain / 0.766
1z5w GTPTubulin gamma-1 chain / 0.737
5itz GTPTubulin alpha-1B chain / 0.732
4zol GTPTubulin alpha-1B chain / 0.727
4yj2 GTPTubulin alpha-1B chain / 0.726
3zid GDPTubulin-like protein CetZ / 0.717
3cb2 GDPTubulin gamma-1 chain / 0.716
4o4l GTPTubulin alpha-1B chain / 0.713
4wbn GTPTubulin alpha-1B chain / 0.703
4b45 GSPTubulin-like protein CetZ2 / 0.700
5jqg GTPTubulin alpha-1B chain / 0.695
4iij GTPTubulin alpha-1B chain / 0.685
4o4i GTPTubulin alpha-1B chain / 0.685
2bto GTPTubulin / 0.684
3ryh GTPTubulin alpha chain / 0.662
1w5a GTPCell division protein FtsZ 1 / 0.659
5la6 GDPTubulin beta-2B chain / 0.659
1zc3 GNPRas-related protein Ral-A / 0.658
1vg8 GNPRas-related protein Rab-7a / 0.652
1w5t ANPORC1-type DNA replication protein 2 / 0.650