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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yro GDU Beta-1,4-galactosyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yro GDUBeta-1,4-galactosyltransferase 1 / 1.313
1oqm UD2Beta-1,4-galactosyltransferase 1 / 1.216
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 1.206
1o23 UPGBeta-1,4-galactosyltransferase 1 / 1.073
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 1.002
5c47 URMHisto-blood group ABO system transferase / 0.726
5c3a URMHisto-blood group ABO system transferase / 0.717
3v0m 5GWHisto-blood group ABO system transferase / 0.708
5c48 URMHisto-blood group ABO system transferase / 0.698
3zgf IUGHisto-blood group ABO system transferase / 0.683
3v0o 4GWHisto-blood group ABO system transferase / 0.674
5c4b UPGHisto-blood group ABO system transferase / 0.670
3hdy GDUUDP-galactopyranose mutase / 0.668
1fr8 GDUBeta-1,4-galactosyltransferase 1 / 0.666
2p0a ANPSynapsin-3 / 0.656
5c1h GDUHisto-blood group ABO system transferase / 0.655
5c4f UPGHisto-blood group ABO system transferase / 0.653
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.652
5c4c UPGHisto-blood group ABO system transferase / 0.650