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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yc2 APR NAD-dependent protein deacylase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yc2 APRNAD-dependent protein deacylase 2 / 1.283
1s7g APRNAD-dependent protein deacylase 2 / 1.177
2h59 3ODNAD-dependent protein deacetylase / 0.919
2h59 APRNAD-dependent protein deacetylase / 0.915
1m2j APRNAD-dependent protein deacylase 1 / 0.875
1m2h APRNAD-dependent protein deacylase 1 / 0.872
1m2g APRNAD-dependent protein deacylase 1 / 0.871
5d7p AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.870
5d7o AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.853
1m2k APRNAD-dependent protein deacylase 1 / 0.828
5d7q AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.825
3zg6 APRNAD-dependent protein deacetylase sirtuin-6 3.5.1 0.817
4bvb AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.803
2b4y APRNAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.783
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.746
2pan FADGlyoxylate carboligase 4.1.1.47 0.729
4j1t NAPNAD(P) transhydrogenase subunit beta / 0.699
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.689
4iao APRNAD-dependent histone deacetylase SIR2 3.5.1 0.688
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.684
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.684
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.680
3d4b DZDNAD-dependent protein deacetylase / 0.677
3ldg SAHUncharacterized protein / 0.671
4fp9 SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.668
4zzj CNANAD-dependent protein deacetylase sirtuin-1 3.5.1 0.655
1c0l FADD-amino-acid oxidase 1.4.3.3 0.653
2yx1 SFGtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.653
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.651
1qan SAHrRNA adenine N-6-methyltransferase 2.1.1.184 0.650