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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y5v NE8 Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y5v NE8Queuine tRNA-ribosyltransferase 2.4.2.29 1.008
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.838
3ge7 AFQQueuine tRNA-ribosyltransferase 2.4.2.29 0.835
4fsa 0V3Queuine tRNA-ribosyltransferase 2.4.2.29 0.827
4giy 0WYQueuine tRNA-ribosyltransferase 2.4.2.29 0.818
1y5x E89Queuine tRNA-ribosyltransferase 2.4.2.29 0.816
2bbf 344Queuine tRNA-ribosyltransferase 2.4.2.29 0.793
4fr1 0V2Queuine tRNA-ribosyltransferase 2.4.2.29 0.783
3gc4 AAQQueuine tRNA-ribosyltransferase 2.4.2.29 0.779
4gkt 0O1Queuine tRNA-ribosyltransferase 2.4.2.29 0.768
4gi4 0EXQueuine tRNA-ribosyltransferase 2.4.2.29 0.765
1y5w NEZQueuine tRNA-ribosyltransferase 2.4.2.29 0.756
2qzr S79Queuine tRNA-ribosyltransferase 2.4.2.29 0.751
3gc5 2MQQueuine tRNA-ribosyltransferase 2.4.2.29 0.743
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.738
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.705
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.703
1q66 KMBQueuine tRNA-ribosyltransferase 2.4.2.29 0.697
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.695
4fps 0UXQueuine tRNA-ribosyltransferase 2.4.2.29 0.693
4gh3 0EVQueuine tRNA-ribosyltransferase 2.4.2.29 0.684
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.682
4gh1 0WXQueuine tRNA-ribosyltransferase 2.4.2.29 0.678
4gg9 0WWQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.658
4e5f 0N7Polymerase acidic protein / 0.657
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.656