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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xm1 GAH Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xm1 GAHProthrombin 3.4.21.5 1.160
3f68 91UProthrombin 3.4.21.5 0.724
1ta6 177Prothrombin 3.4.21.5 0.722
3qwc 98PProthrombin 3.4.21.5 0.712
1k22 MELProthrombin 3.4.21.5 0.711
1sl3 170Prothrombin 3.4.21.5 0.695
4bam MM9Prothrombin 3.4.21.5 0.691
2zfq 45UProthrombin 3.4.21.5 0.690
2zc9 22UProthrombin 3.4.21.5 0.689
2zff 53UProthrombin 3.4.21.5 0.689
2znk 31UProthrombin 3.4.21.5 0.689
3dhk 23UProthrombin 3.4.21.5 0.688
4ban M6SProthrombin 3.4.21.5 0.687
2zdv 37UProthrombin 3.4.21.5 0.685
1o0d 163Prothrombin 3.4.21.5 0.682
2zgx 29UProthrombin 3.4.21.5 0.682
4bak M67Prothrombin 3.4.21.5 0.679
1k21 IGNProthrombin 3.4.21.5 0.675
2zg0 50UProthrombin 3.4.21.5 0.675
3p17 99PProthrombin 3.4.21.5 0.675
2zi2 24UProthrombin 3.4.21.5 0.674
4bah MELProthrombin 3.4.21.5 0.672
4baq M4ZProthrombin 3.4.21.5 0.671
2zhf 49UProthrombin 3.4.21.5 0.670
3dux 64UProthrombin 3.4.21.5 0.670
3eq0 2TSProthrombin 3.4.21.5 0.670
2zf0 51UProthrombin 3.4.21.5 0.669
1t4u 81AProthrombin 3.4.21.5 0.667
1ypl RA8Prothrombin 3.4.21.5 0.666
2zda 32UProthrombin 3.4.21.5 0.666
2zfp 19UProthrombin 3.4.21.5 0.666
1ypm RA4Prothrombin 3.4.21.5 0.663
3utu 1TSProthrombin 3.4.21.5 0.663
1riw OSCProthrombin 3.4.21.5 0.662
4ayv 9MQProthrombin 3.4.21.5 0.662
1zrb 062Prothrombin 3.4.21.5 0.661
3qtv 06PProthrombin 3.4.21.5 0.661
1nzq 162Prothrombin 3.4.21.5 0.660
4bao MVFProthrombin 3.4.21.5 0.657
1nt1 T76Prothrombin 3.4.21.5 0.655
2zgb 21UProthrombin 3.4.21.5 0.653
1c4u IH1Prothrombin 3.4.21.5 0.650