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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xjn DTP Vitamin B12-dependent ribonucleotide reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xjn DTPVitamin B12-dependent ribonucleotide reductase / 1.055
1xjg DTPVitamin B12-dependent ribonucleotide reductase / 0.805
1xjk DGTVitamin B12-dependent ribonucleotide reductase / 0.795
3o0q TTPVitamin B12-dependent ribonucleotide reductase / 0.744
1xjj DGTVitamin B12-dependent ribonucleotide reductase / 0.729
3o0n TTPVitamin B12-dependent ribonucleotide reductase / 0.726
1xje TTPVitamin B12-dependent ribonucleotide reductase / 0.717
5im3 DTPRibonucleoside-diphosphate reductase / 0.700
1ny5 ADPTranscriptional regulator (NtrC family) / 0.675
2pul ACPMethylthioribose kinase 2.7.1.100 0.662
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.658
3k8t DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.658
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.658
2ya3 J7V5'-AMP-activated protein kinase subunit gamma-1 / 0.651
1oe0 TTPDeoxynucleoside kinase / 0.650