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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xaj NAD 3-dehydroquinate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xaj NAD3-dehydroquinate synthase / 1.170
1xah NAD3-dehydroquinate synthase / 0.952
1xag NAD3-dehydroquinate synthase / 0.917
1xal NAD3-dehydroquinate synthase / 0.892
3zok NAD3-dehydroquinate synthase, chloroplastic 4.2.3.4 0.818
4p53 NAI2-epi-5-epi-valiolone synthase / 0.762
3qbd NAD3-dehydroquinate synthase 4.2.3.4 0.759
1nr5 NADPentafunctional AROM polypeptide / 0.758
5hvn NAD3-dehydroquinate synthase / 0.741
3clh NAD3-dehydroquinate synthase 4.2.3.4 0.729
3okf NAD3-dehydroquinate synthase 4.2.3.4 0.729
1nvb NADPentafunctional AROM polypeptide / 0.715
1nve NADPentafunctional AROM polypeptide / 0.696
1sg6 NADPentafunctional AROM polypeptide / 0.686
3hl0 NADMaleylacetate reductase / 0.682
4i8q NADPutative betaine aldehyde dehyrogenase / 0.662
1nvf ADPPentafunctional AROM polypeptide / 0.658
5br4 NADLactaldehyde reductase 1.1.1.77 0.655
1t90 NADMalonate-semialdehyde dehydrogenase 1.2.1.27 0.653
3rf7 NADIron-containing alcohol dehydrogenase / 0.653