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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wqv PSM Coagulation factor VII 3.4.21.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wqv PSMCoagulation factor VII 3.4.21.21 1.091
2zp0 PI0Coagulation factor VII 3.4.21.21 0.960
1wtg 3BPCoagulation factor VII 3.4.21.21 0.887
1wv7 5PICoagulation factor VII 3.4.21.21 0.885
4bak M67Prothrombin 3.4.21.5 0.800
2zg0 50UProthrombin 3.4.21.5 0.778
4bao MVFProthrombin 3.4.21.5 0.765
3utu 1TSProthrombin 3.4.21.5 0.764
4bam MM9Prothrombin 3.4.21.5 0.761
1k22 MELProthrombin 3.4.21.5 0.760
4baq M4ZProthrombin 3.4.21.5 0.759
2c4f GILCoagulation factor VII 3.4.21.21 0.758
2zda 32UProthrombin 3.4.21.5 0.757
4bah MELProthrombin 3.4.21.5 0.754
4ban M6SProthrombin 3.4.21.5 0.754
2zi2 24UProthrombin 3.4.21.5 0.744
3biu 10UProthrombin 3.4.21.5 0.740
2zhq 27UProthrombin 3.4.21.5 0.737
2znk 31UProthrombin 3.4.21.5 0.736
2zgx 29UProthrombin 3.4.21.5 0.734
1zsk 421Coagulation factor XI 3.4.21.27 0.727
2zfq 45UProthrombin 3.4.21.5 0.726
1ypk CCRProthrombin 3.4.21.5 0.725
2zhf 49UProthrombin 3.4.21.5 0.720
1o0d 163Prothrombin 3.4.21.5 0.718
2anm CDOProthrombin 3.4.21.5 0.718
1lpk CBBCoagulation factor X 3.4.21.6 0.717
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.715
3biv 11UProthrombin 3.4.21.5 0.705
2zhe 13UProthrombin 3.4.21.5 0.704
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.703
2gde SN3Prothrombin 3.4.21.5 0.702
1c5n ESIProthrombin 3.4.21.5 0.698
1k21 IGNProthrombin 3.4.21.5 0.696
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.693
1riw OSCProthrombin 3.4.21.5 0.683
2a2x NA9Prothrombin 3.4.21.5 0.682
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.681
1ypm RA4Prothrombin 3.4.21.5 0.681
4ayv 9MQProthrombin 3.4.21.5 0.678
1ypg UIRProthrombin 3.4.21.5 0.675
1c4u IH1Prothrombin 3.4.21.5 0.674
1c4v IH2Prothrombin 3.4.21.5 0.673
1kts C24Prothrombin 3.4.21.5 0.670
1ypl RA8Prothrombin 3.4.21.5 0.669
2zhw 12UProthrombin 3.4.21.5 0.669
3plp BBACationic trypsin 3.4.21.4 0.667
4joo 1M4Beta-secretase 1 3.4.23.46 0.663
4jpe 1M7Beta-secretase 1 3.4.23.46 0.662
4az2 9MUProthrombin 3.4.21.5 0.661
1vzq SHYProthrombin 3.4.21.5 0.660
1ae8 AZLProthrombin 3.4.21.5 0.659
1w13 SM1Urokinase-type plasminogen activator 3.4.21.73 0.659
3qwc 98PProthrombin 3.4.21.5 0.659
1ypj UIBProthrombin 3.4.21.5 0.658
5cmx 0G6Prothrombin 3.4.21.5 0.658
1ype UIPProthrombin 3.4.21.5 0.657
3v0x ANHCationic trypsin 3.4.21.4 0.657
3p17 99PProthrombin 3.4.21.5 0.655
4ax9 N5NProthrombin 3.4.21.5 0.655
4e7r 0NWProthrombin 3.4.21.5 0.653
1nt1 T76Prothrombin 3.4.21.5 0.651
1d4p BPPProthrombin 3.4.21.5 0.650