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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wc6 TAT Adenylate cyclase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wc6 TATAdenylate cyclase / 1.054
1wc3 APCAdenylate cyclase / 0.681
1wc0 APCAdenylate cyclase / 0.667
1wc4 APCAdenylate cyclase / 0.661
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.660
3dzd ADPTranscriptional regulator (NtrC family) / 0.659
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.651