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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w5b GTP Cell division protein FtsZ 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1w5b GTPCell division protein FtsZ 1 / 1.086
1w5a GTPCell division protein FtsZ 1 / 1.005
2r6r GDPCell division protein FtsZ / 0.754
3vo8 GDPCell division protein FtsZ / 0.735
4b45 GSPTubulin-like protein CetZ2 / 0.721
5jqg GTPTubulin alpha-1B chain / 0.717
3ryh GTPTubulin alpha chain / 0.708
4kwe GDPCell division protein FtsZ / 0.706
4zol GTPTubulin alpha-1B chain / 0.706
3zid GDPTubulin-like protein CetZ / 0.687
4iij GTPTubulin alpha-1B chain / 0.677
4yj2 GTPTubulin alpha-1B chain / 0.671
4wbn GTPTubulin alpha-1B chain / 0.668
5itz GTPTubulin alpha-1B chain / 0.667
1krv 147Galactoside O-acetyltransferase 2.3.1.18 0.653
3dt4 GTPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.651
3wgn GSPCell division protein FtsZ / 0.650