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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w2g THM Thymidylate kinase 2.7.4.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1w2g THMThymidylate kinase 2.7.4.9 0.938
1n5i TMPThymidylate kinase 2.7.4.9 0.821
2yof 74WThymidylate kinase / 0.665
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
2uz3 TTPThymidine kinase / 0.659
5fuv THMThymidine kinase, putative / 0.658
1p72 THMThymidine kinase / 0.655
3n2i THMThymidylate kinase 2.7.4.9 0.651