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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1w0x OLO Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.900
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.721
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.712
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.707
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.705
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.694
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.694
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.692
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.690
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.685
1unl RRCCyclin-dependent-like kinase 5 2.7.11.1 0.675
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.672
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.672
4kd1 1QKCyclin-dependent kinase 2 2.7.11.22 0.672
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.668
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.667
2r3p 3SCCyclin-dependent kinase 2 2.7.11.22 0.665
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.665
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.663
1v0p PVBCell division control protein 2 homolog 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.659
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.657
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.656
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.653
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.653
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.653
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.653
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.650