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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vjt NAD Alpha-glucosidase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vjt NADAlpha-glucosidase, putative / 1.030
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.734
1x7d NADPutative ornithine cyclodeaminase / 0.724
1u7h NADPutative ornithine cyclodeaminase / 0.708
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.694
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.693
1up7 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.685
3sx2 NADUncharacterized protein / 0.685
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.684
2ekl NADD-3-phosphoglycerate dehydrogenase / 0.682
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.677
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.675
3gwz SAHMitomycin biosynthesis 6-O-methyltransferase / 0.675
3tsc NADUncharacterized protein / 0.675
3wv7 ADPHmd co-occurring protein HcgE / 0.674
3reo SAH(Iso)eugenol O-methyltransferase 2.1.1.146 0.670
3wv8 ATPHmd co-occurring protein HcgE / 0.668
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.667
2vhx NADAlanine dehydrogenase 1.4.1.1 0.662
3i53 SAH2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase / 0.662
2o07 MTASpermidine synthase 2.5.1.16 0.661
2voj NADAlanine dehydrogenase 1.4.1.1 0.660
4jk3 NADUncharacterized protein / 0.659
3icp NADNAD-dependent epimerase/dehydratase / 0.652
4j49 NADUncharacterized protein / 0.652
3qw2 NADMyo-inositol-1-phosphate synthase (Ino1) / 0.651
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.651
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.650
5icf SAH(S)-norcoclaurine 6-O-methyltransferase / 0.650