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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vji FMN 12-oxophytodienoate reductase 1 1.3.1.42

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 1.221
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 1.135
3f03 FMNPentaerythritol tetranitrate reductase / 1.130
1h51 FMNPentaerythritol tetranitrate reductase / 1.117
3tjl FMNNADPH dehydrogenase / 1.105
4m5p FMNNADPH dehydrogenase / 1.104
3p67 FMNPentaerythritol tetranitrate reductase / 1.096
1h63 FMNPentaerythritol tetranitrate reductase / 1.089
4df2 FMNNADPH dehydrogenase / 1.089
1vyr FMNPentaerythritol tetranitrate reductase / 1.086
1h50 FMNPentaerythritol tetranitrate reductase / 1.085
2abb FMNPentaerythritol tetranitrate reductase / 1.082
3p84 FMNPentaerythritol tetranitrate reductase / 1.078
3p8j FMNPentaerythritol tetranitrate reductase / 1.078
4jic FMNGTN Reductase / 1.067
3p8i FMNPentaerythritol tetranitrate reductase / 1.063
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 1.051
3p62 FMNPentaerythritol tetranitrate reductase / 1.047
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 1.035
3p74 FMNPentaerythritol tetranitrate reductase / 1.032
1gwj FMNMorphinone reductase / 1.013
3atz FMNProstaglandin F2a synthase / 1.011
3aty FMNProstaglandin F2a synthase / 1.002
4tmc FMNOld yellow enzyme / 1.000
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.996
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.994
3p82 FMNPentaerythritol tetranitrate reductase / 0.993
4e2b FMNDehydrogenase / 0.990
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.989
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.982
4e2d FMNDehydrogenase / 0.981
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.978
3gka FMNN-ethylmaleimide reductase / 0.956
4tmb FMNOld yellow enzyme / 0.949
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.944
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.940
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.934
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.923
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.916
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.905
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.899
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.899
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.891
4qai FMNNADPH dehydrogenase / 0.889
4utm FNRXenobiotic reductase / 0.877
4utl FNRXenobiotic reductase / 0.876
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.875
4utk FNRXenobiotic reductase / 0.873
1z48 FMNNADPH dehydrogenase / 0.864
3l5l FMNXenobiotic reductase / 0.863
2h8x FMNXenA / 0.860
4uth FMNXenobiotic reductase / 0.858
3l67 FMNXenobiotic reductase / 0.853
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.847
1z44 FMNNADPH dehydrogenase / 0.845
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.842
5cpm FNRNADH:flavin oxidoreductase / 0.842
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.835
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.834
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.825
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.822
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.820
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.818
3n14 FMNXenobiotic reductase / 0.814
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.806
1vhn FMNtRNA-dihydrouridine synthase / 0.805
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.802
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.801
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.798
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.791
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.790
1z41 FMNNADPH dehydrogenase / 0.789
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.789
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.788
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.786
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.783
5ebu FMNLactate oxidase / 0.782
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.776
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.774
3n19 FNRXenobiotic reductase / 0.772
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.772
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.771
4yl2 FMNLactate oxidase / 0.764
4yco FMNtRNA-dihydrouridine(16) synthase / 0.762
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.758
2e77 FMNLactate oxidase / 0.747
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.743
3hf3 FMNChromate reductase / 0.743
2zfa FMNLactate oxidase / 0.741
3oix FMNDihydroorotate dehydrogenase / 0.738
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.734
3gr8 FMNNADPH dehydrogenase / 0.728
4rje FNRLactate oxidase / 0.724
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.721
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.721
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.720
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.718
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.710
3w77 FMNFMN-dependent NADH-azoreductase / 0.697
2du2 FMNLactate oxidase / 0.692
4hj3 FMNLOV protein / 0.691
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.688
2j6x FMNLactate oxidase / 0.688
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.688
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.685
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.681
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.679
3esz FMNFlavodoxin / 0.678
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.677
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.675
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.673
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
4cw5 FMNDfnA / 0.671
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.671
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.669
4hj6 FMNLOV protein / 0.669
1p4m FMNRiboflavin kinase 2.7.1.26 0.668
2z6i FMN2-nitropropane dioxygenase / 0.668
2z9d FMNFMN-dependent NADH-azoreductase / 0.668
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.668
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.666
2q9u FMNA-type flavoprotein / 0.665
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.662
4cnz ADPNitrogen regulatory protein P-II 1 / 0.662
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.662
4bmo FMNProtein NrdI / 0.660
4q73 FADBifunctional protein PutA / 0.660
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.657
4nm9 FADBifunctional protein PutA / 0.657
4yus FMNFamily 3 adenylate cyclase / 0.657
2vxa RBFDodecin / 0.656
3dga UMPBifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.655
2gjl FMNNitronate monooxygenase 1.13.12.16 0.654
4ttc FMNIodotyrosine deiodinase 1 / 0.654
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.653
4j8p FMNFlavodoxin / 0.653
4q71 FADBifunctional protein PutA / 0.650