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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vgr COA Formyl-CoA:oxalate CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vgr COAFormyl-CoA:oxalate CoA-transferase / 1.144
1vgq CAOFormyl-CoA:oxalate CoA-transferase / 0.881
1t3z CAOFormyl-CoA:oxalate CoA-transferase / 0.758
2vjm COAFormyl-CoA:oxalate CoA-transferase / 0.729
1q6y COAFormyl-CoA:oxalate CoA-transferase / 0.696
1pt8 ACOFormyl-CoA:oxalate CoA-transferase / 0.691
1pt5 ACOFormyl-CoA:oxalate CoA-transferase / 0.687
1p5r COAFormyl-CoA:oxalate CoA-transferase / 0.665