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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1vcf FMN Isopentenyl-diphosphate delta-isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 1.131
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.784
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.780
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.777
1z48 FMNNADPH dehydrogenase / 0.756
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.756
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.752
1z44 FMNNADPH dehydrogenase / 0.744
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.739
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.733
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.728
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.721
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.720
3hf3 FMNChromate reductase / 0.718
3n14 FMNXenobiotic reductase / 0.713
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.710
3qe2 FMNNADPH--cytochrome P450 reductase / 0.710
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
4hia FMNLOV protein / 0.708
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.706
4tmc FMNOld yellow enzyme / 0.705
4jic FMNGTN Reductase / 0.702
2pr5 FMNBlue-light photoreceptor / 0.700
3haz FADBifunctional protein PutA / 0.700
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.697
3qfr FMNNADPH--cytochrome P450 reductase / 0.692
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.691
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.690
1z41 FMNNADPH dehydrogenase / 0.688
2gjn FMNNitronate monooxygenase 1.13.12.16 0.686
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.685
3p74 FMNPentaerythritol tetranitrate reductase / 0.684
4j8p FMNFlavodoxin / 0.684
4bmo FMNProtein NrdI / 0.683
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.682
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.681
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.681
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.679
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.678
3gr8 FMNNADPH dehydrogenase / 0.678
3n19 FNRXenobiotic reductase / 0.676
4bmp FMNProtein NrdI / 0.676
4utl FNRXenobiotic reductase / 0.676
3gka FMNN-ethylmaleimide reductase / 0.675
2bf4 FMNNADPH--cytochrome P450 reductase / 0.673
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.672
1n9l FMNPutative blue light receptor / 0.672
3l5l FMNXenobiotic reductase / 0.672
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
2h8x FMNXenA / 0.670
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.670
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.670
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.669
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.667
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.667
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.666
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.666
1vyr FMNPentaerythritol tetranitrate reductase / 0.666
3p62 FMNPentaerythritol tetranitrate reductase / 0.666
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.666
1fx1 FMNFlavodoxin / 0.664
2pg0 FADAcyl-CoA dehydrogenase / 0.664
2zaf FADNitroalkane oxidase 1.7.3.1 0.664
3n3b FMNProtein NrdI / 0.661
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.661
4oxx FMNCindoxin / 0.660
4q71 FADBifunctional protein PutA / 0.659
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.658
3p67 FMNPentaerythritol tetranitrate reductase / 0.658
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.657
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.656
4gu5 FADCryptochrome-1 / 0.655
4irn FADAnaB / 0.655
4hh0 FMNAppA protein / 0.654
5ahs FADAcyl-CoA dehydrogenase / 0.653
3p84 FMNPentaerythritol tetranitrate reductase / 0.652
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.651
3ewk FADSensory box histidine kinase/response regulator / 0.651
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.651
4yco FMNtRNA-dihydrouridine(16) synthase / 0.651
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.650