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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v9o ADP Signaling protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v9o ADPSignaling protein / 0.986
1v3s ATPSignaling protein / 0.791
4co4 ATPNitrogen regulatory protein P-II 1 / 0.764
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.726
3ta0 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.685
4rx6 ATPNitrogen regulatory PII-like protein / 0.678
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.666
4cnz ADPNitrogen regulatory protein P-II 1 / 0.664
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.659
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.658
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.651