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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v1k 3FP Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.904
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.703
3nux 3NVCyclin-dependent kinase 6 2.7.11.22 0.690
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.670
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.666
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.658
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.655
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.655
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.654
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.654
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.653
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.653