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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uam SAH tRNA (guanine-N(1)-)-methyltransferase 2.1.1.228

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uam SAHtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.901
4yvk SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.814
4yvj SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.783
1p9p SAHtRNA (guanine-N(1)-)-methyltransferase / 0.771
4yvh SFGtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.759
4h3z SAHtRNA (guanine-N(1)-)-methyltransferase / 0.755
4h3y SAHtRNA (guanine-N(1)-)-methyltransferase / 0.745
4ig6 SAHtRNA (guanine-N(1)-)-methyltransferase / 0.721
4jwh SAHtRNA (guanine(9)-N1)-methyltransferase / 0.685
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.679
1ual SAHtRNA (guanine-N(1)-)-methyltransferase 2.1.1.228 0.676
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.671
3gyq SAM23S rRNA (adenosine(1067)-2'-O)-methyltransferase / 0.663
2ha8 SAHProbable methyltransferase TARBP1 / 0.659
3n4k SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.656
2cx8 SAHRibosomal RNA small subunit methyltransferase E / 0.655
4cng SAHSpoU rRNA methylase / 0.654
4jwj SAHtRNA (guanine(9)-N1)-methyltransferase / 0.650
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.650
4x3l MTARNA 2'-O ribose methyltransferase / 0.650