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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u7w CTP Coenzyme A biosynthesis bifunctional protein CoaBC 6.3.2.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u7w CTPCoenzyme A biosynthesis bifunctional protein CoaBC 6.3.2.5 1.114
1u80 C5PCoenzyme A biosynthesis bifunctional protein CoaBC 6.3.2.5 0.660
1xjk DGTVitamin B12-dependent ribonucleotide reductase / 0.656
1z5c ADPType 2 DNA topoisomerase 6 subunit B / 0.656
1e94 ANPATP-dependent protease ATPase subunit HslU / 0.650
4fvq ATPTyrosine-protein kinase JAK2 / 0.650
4pl4 ADPSerine/threonine-protein kinase/endoribonuclease IRE1 2.7.11.1 0.650