2.850 Å
X-ray
2004-08-04
| Name: | Coenzyme A biosynthesis bifunctional protein CoaBC |
|---|---|
| ID: | COABC_ECOLI |
| AC: | P0ABQ0 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 6.3.2.5 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 6 % |
| B | 94 % |
| B-Factor: | 49.861 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.685 | 705.375 |
| % Hydrophobic | % Polar |
|---|---|
| 40.67 | 59.33 |
| According to VolSite | |

| HET Code: | C5P |
|---|---|
| Formula: | C9H12N3O8P |
| Molecular weight: | 321.181 g/mol |
| DrugBank ID: | DB03403 |
| Buried Surface Area: | 65.49 % |
| Polar Surface area: | 190.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 40.3639 | 54.0198 | 109.428 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | O | ALA- 275 | 2.64 | 173.26 | H-Bond (Ligand Donor) |
| O3P | NZ | LYS- 289 | 3.72 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 289 | 2.69 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 289 | 2.69 | 158.44 | H-Bond (Protein Donor) |
| O1P | NZ | LYS- 292 | 3.62 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 292 | 3.27 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 292 | 3.27 | 157.06 | H-Bond (Protein Donor) |
| N4 | O | PRO- 308 | 2.97 | 166.31 | H-Bond (Ligand Donor) |
| N3 | N | ILE- 310 | 3.1 | 130.94 | H-Bond (Protein Donor) |
| C4' | CG1 | VAL- 311 | 4.05 | 0 | Hydrophobic |
| C1' | CG1 | VAL- 311 | 3.53 | 0 | Hydrophobic |
| O2 | N | VAL- 311 | 2.6 | 175.56 | H-Bond (Protein Donor) |
| C3' | CB | PHE- 327 | 4.36 | 0 | Hydrophobic |
| O3' | N | PHE- 327 | 2.67 | 173.04 | H-Bond (Protein Donor) |
| O3P | NZ | LYS- 341 | 3.85 | 0 | Ionic (Protein Cationic) |
| O1P | NZ | LYS- 341 | 2.94 | 0 | Ionic (Protein Cationic) |
| O1P | NZ | LYS- 341 | 2.94 | 137.03 | H-Bond (Protein Donor) |
| O1P | NZ | LYS- 345 | 2.86 | 160.24 | H-Bond (Protein Donor) |
| O4' | NZ | LYS- 345 | 2.81 | 123.59 | H-Bond (Protein Donor) |
| O1P | NZ | LYS- 345 | 2.86 | 0 | Ionic (Protein Cationic) |