Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u3d FAD Cryptochrome-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u3d FADCryptochrome-1 / 1.247
1u3c FADCryptochrome-1 / 1.205
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.071
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.071
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.057
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.056
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.015
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.983
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.976
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.974
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.963
2wq7 FADRE11660p / 0.948
2wq6 FADRE11660p / 0.942
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.937
1np7 FADCryptochrome DASH / 0.929
3cvu FADRE11660p / 0.926
3cvy FADRE11660p / 0.926
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.923
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.919
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.914
4i6g FADCryptochrome-2 / 0.901
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.897
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.891
4cdm FADDeoxyribodipyrimidine photolyase / 0.860
4dja FAD(6-4) photolyase / 0.859
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.833
2wb2 FADRE11660p / 0.826
4jzy FADCryptochrome-1 / 0.824
4gu5 FADCryptochrome-1 / 0.791
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.785
4yl2 FMNLactate oxidase / 0.672
1gal FADGlucose oxidase 1.1.3.4 0.667
3gg0 FMNUncharacterized protein / 0.659
4eeu FMNPhototropin-2 2.7.11.1 0.658
2du2 FMNLactate oxidase / 0.655
2e77 FMNLactate oxidase / 0.654
3gfz FMNUncharacterized protein / 0.653
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.653
3gfx FMNUncharacterized protein / 0.652
2q0k FADThioredoxin reductase 1.8.1.9 0.650