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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u3c FAD Cryptochrome-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u3c FADCryptochrome-1 / 1.211
1u3d FADCryptochrome-1 / 1.205
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.024
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.023
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.017
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.009
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.968
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.963
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.958
2wq6 FADRE11660p / 0.947
3cvu FADRE11660p / 0.940
1np7 FADCryptochrome DASH / 0.936
3cvy FADRE11660p / 0.929
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.915
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.913
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.909
2wq7 FADRE11660p / 0.909
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.907
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.905
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.904
4i6g FADCryptochrome-2 / 0.886
4dja FAD(6-4) photolyase / 0.881
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.877
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.861
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.861
4cdm FADDeoxyribodipyrimidine photolyase / 0.852
4jzy FADCryptochrome-1 / 0.845
4gu5 FADCryptochrome-1 / 0.797
2wb2 FADRE11660p / 0.796
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.764
4yl2 FMNLactate oxidase / 0.685
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.681
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.658
3gg0 FMNUncharacterized protein / 0.658
1nb9 RBFRiboflavin kinase 2.7.1.26 0.656
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.656
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.651
4eeu FMNPhototropin-2 2.7.11.1 0.650