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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u1i NAD Myo-inositol-1-phosphate synthase (Ino1)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u1i NADMyo-inositol-1-phosphate synthase (Ino1) / 1.017
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.729
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.727
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.713
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.705
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.698
1p1i NADInositol-3-phosphate synthase 5.5.1.4 0.688
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.687
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.677
3wv7 ADPHmd co-occurring protein HcgE / 0.672
3orf NADDihydropteridine reductase 1.5.1.34 0.666
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.664
1hdr NADDihydropteridine reductase 1.5.1.34 0.662
4i1i NADMalate dehydrogenase / 0.660
4y9d NAIC alpha-dehydrogenase / 0.660
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.659
1emd NADMalate dehydrogenase / 0.658
1ie3 NADMalate dehydrogenase / 0.658
1sow NADL-lactate dehydrogenase 1.1.1.27 0.657
2pa3 NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.656
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.656
3pqf NADL-lactate dehydrogenase 1.1.1.27 0.656
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.652
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.652
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.651