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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1szf FMN Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 1.241
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 1.164
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 1.145
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 1.133
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.952
2nli FMNLactate oxidase / 0.927
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.926
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.915
4yl2 FMNLactate oxidase / 0.914
2zfa FMNLactate oxidase / 0.901
2j6x FMNLactate oxidase / 0.886
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.874
2e77 FMNLactate oxidase / 0.866
4rje FNRLactate oxidase / 0.863
2du2 FMNLactate oxidase / 0.848
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.814
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.782
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.774
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.764
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.763
5ebu FMNLactate oxidase / 0.762
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.750
4cw5 FMNDfnA / 0.750
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.747
2h8x FMNXenA / 0.735
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.735
3b03 VNRIsopentenyl-diphosphate delta-isomerase / 0.731
5cpm FNRNADH:flavin oxidoreductase / 0.728
3p82 FMNPentaerythritol tetranitrate reductase / 0.727
1z44 FMNNADPH dehydrogenase / 0.726
3l5l FMNXenobiotic reductase / 0.726
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.725
4uth FMNXenobiotic reductase / 0.725
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.719
4utm FNRXenobiotic reductase / 0.711
1z48 FMNNADPH dehydrogenase / 0.708
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.708
3l67 FMNXenobiotic reductase / 0.704
4m5p FMNNADPH dehydrogenase / 0.704
1vhn FMNtRNA-dihydrouridine synthase / 0.702
2gjl FMNNitronate monooxygenase 1.13.12.16 0.701
4utl FNRXenobiotic reductase / 0.700
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.699
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.693
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.692
3uwq U5POrotidine 5'-phosphate decarboxylase / 0.689
3tjl FMNNADPH dehydrogenase / 0.688
3hf3 FMNChromate reductase / 0.669
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.668
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.668
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.666
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.666
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.665
4utk FNRXenobiotic reductase / 0.665
1h63 FMNPentaerythritol tetranitrate reductase / 0.660
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.658
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.656
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.655
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.654
4z38 FMNMlnA / 0.654