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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1swr BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1swr BTNStreptavidin / 1.073
2izf BTNStreptavidin / 0.931
1stp BTNStreptavidin / 0.926
2izj BTNStreptavidin / 0.915
2y3f BTNStreptavidin / 0.915
3ry2 BTNStreptavidin / 0.913
4yvb BTNStreptavidin / 0.909
3wyp BSOStreptavidin / 0.908
2izh BTNStreptavidin / 0.900
2rtg BTNStreptavidin / 0.900
4gda BTNStreptavidin / 0.900
2izi BTNStreptavidin / 0.887
4z28 BTNHoefavidin / 0.887
2rtd BTNStreptavidin / 0.884
1i9h BNIStreptavidin / 0.883
2zsc BTNTamavidin2 / 0.883
1swe BTNStreptavidin / 0.882
1nqm BTNStreptavidin / 0.881
1mk5 BTNStreptavidin / 0.873
1swd BTNStreptavidin / 0.873
3wyq BTNStreptavidin / 0.869
1swp BTQStreptavidin / 0.868
2rtf BTNStreptavidin / 0.868
2izg BTNStreptavidin / 0.865
4bx7 B4FStreptavidin / 0.863
1n43 BTNStreptavidin / 0.856
3wzn BTNStreptavidin / 0.850
4gd9 BTNStreptavidin / 0.849
2rte BTNStreptavidin / 0.846
1swg BTNStreptavidin / 0.845
1lcw SHMStreptavidin / 0.843
3rdo BTNStreptavidin / 0.843
1swp BTNStreptavidin / 0.841
1n9m BTNStreptavidin / 0.837
1df8 BTNStreptavidin / 0.832
1lcz BH7Streptavidin / 0.825
2izl IMIStreptavidin / 0.816
1mep BTNStreptavidin / 0.812
2uyw BTNAvd protein / 0.811
1nc9 IMIStreptavidin / 0.809
2c4i BTNAvidin / 0.809
4dne DTBStreptavidin / 0.805
1luq BTNStreptavidin / 0.803
2rtp IMIStreptavidin / 0.803
1rxh BNIStreptavidin / 0.788
1rxj BNIStreptavidin / 0.786
1ndj BTNStreptavidin / 0.769
2fhn BNIAvidin-related protein 4/5 / 0.769
2rtq IMIStreptavidin / 0.769
2fhl BNIAvidin-related protein 4/5 / 0.767
2rtr IMIStreptavidin / 0.761
3t2w BTNAvidin/streptavidin / 0.759
2rto IMIStreptavidin / 0.757
1swn BTNStreptavidin / 0.754
1y52 BTNAvidin-related protein 4/5 / 0.747
3vhi VHIAvidin / 0.746
2rtm IMIStreptavidin / 0.744
1swt BTNStreptavidin / 0.735
4bj8 BTNAvidin / 0.730
2jgs BTNAvidin / 0.726
1avd BTNAvidin / 0.710
3rdq DTBStreptavidin / 0.704
1ldq SHMAvidin / 0.703
3ew2 BTNHypothetical conserved protein / 0.703
2rtl IMIStreptavidin / 0.696
3vgw NVZAvidin / 0.688
3vhm NPKAvidin / 0.688
1ij8 BNIAvidin / 0.683
2avi BTNAvidin / 0.666
3vhh VHHAvidin / 0.665
4ggz BTNBll1558 protein / 0.660
4dve BTNBiotin transporter BioY / 0.653