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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1swn BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1swn BTNStreptavidin / 1.034
2rtf BTNStreptavidin / 0.924
2rte BTNStreptavidin / 0.921
1n9m BTNStreptavidin / 0.911
3wyq BTNStreptavidin / 0.908
4gda BTNStreptavidin / 0.882
2y3f BTNStreptavidin / 0.877
1i9h BNIStreptavidin / 0.873
1lcw SHMStreptavidin / 0.871
1swt BTNStreptavidin / 0.867
1mk5 BTNStreptavidin / 0.862
2izh BTNStreptavidin / 0.862
1stp BTNStreptavidin / 0.859
2izi BTNStreptavidin / 0.848
2izg BTNStreptavidin / 0.837
3wyp BSOStreptavidin / 0.824
1swe BTNStreptavidin / 0.823
3rdo BTNStreptavidin / 0.822
2zsc BTNTamavidin2 / 0.821
2izj BTNStreptavidin / 0.820
1nqm BTNStreptavidin / 0.816
2rtd BTNStreptavidin / 0.816
2uyw BTNAvd protein / 0.813
4bcs BTNAvidin-related protein 4/5 / 0.807
4dne DTBStreptavidin / 0.807
4gd9 BTNStreptavidin / 0.806
1luq BTNStreptavidin / 0.804
1swg BTNStreptavidin / 0.799
3wzn BTNStreptavidin / 0.798
2rtg BTNStreptavidin / 0.795
2izl IMIStreptavidin / 0.794
3ry2 BTNStreptavidin / 0.794
1ndj BTNStreptavidin / 0.789
2izf BTNStreptavidin / 0.784
4bx7 B4FStreptavidin / 0.784
4yvb BTNStreptavidin / 0.783
1rxj BNIStreptavidin / 0.779
4z28 BTNHoefavidin / 0.778
1y52 BTNAvidin-related protein 4/5 / 0.776
3vgw NVZAvidin / 0.776
2fhl BNIAvidin-related protein 4/5 / 0.774
1rxh BNIStreptavidin / 0.770
1nc9 IMIStreptavidin / 0.767
1swp BTNStreptavidin / 0.765
1swp BTQStreptavidin / 0.763
1n43 BTNStreptavidin / 0.762
2rtn IMIStreptavidin / 0.762
1lcz BH7Streptavidin / 0.759
1swr BTNStreptavidin / 0.754
1df8 BTNStreptavidin / 0.751
3vhi VHIAvidin / 0.751
2uz2 BTNAvd protein / 0.747
3rdq DTBStreptavidin / 0.747
1swd BTNStreptavidin / 0.742
2rtm IMIStreptavidin / 0.736
4ggz BTNBll1558 protein / 0.728
3t2w BTNAvidin/streptavidin / 0.725
4bj8 BTNAvidin / 0.725
2rtr IMIStreptavidin / 0.724
2rtq IMIStreptavidin / 0.723
3ew2 BTNHypothetical conserved protein / 0.722
2rtl IMIStreptavidin / 0.721
2avi BTNAvidin / 0.718
2c4i BTNAvidin / 0.718
1ij8 BNIAvidin / 0.711
2fhn BNIAvidin-related protein 4/5 / 0.710
2rtp IMIStreptavidin / 0.709
2rto IMIStreptavidin / 0.707
2jgs BTNAvidin / 0.694
1mep BTNStreptavidin / 0.690
1ldq SHMAvidin / 0.683
2rtk GLLStreptavidin / 0.671
3vhh VHHAvidin / 0.660