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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1swd BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1swd BTNStreptavidin / 1.014
1swr BTNStreptavidin / 0.873
1stp BTNStreptavidin / 0.872
4yvb BTNStreptavidin / 0.861
1n43 BTNStreptavidin / 0.846
1mk5 BTNStreptavidin / 0.833
2izi BTNStreptavidin / 0.833
4bx7 B4FStreptavidin / 0.825
3wyq BTNStreptavidin / 0.821
4z28 BTNHoefavidin / 0.814
3wyp BSOStreptavidin / 0.813
1rxj BNIStreptavidin / 0.807
1luq BTNStreptavidin / 0.806
1swg BTNStreptavidin / 0.795
2izj BTNStreptavidin / 0.795
2y3f BTNStreptavidin / 0.791
2izf BTNStreptavidin / 0.786
4gd9 BTNStreptavidin / 0.785
1swe BTNStreptavidin / 0.780
2zsc BTNTamavidin2 / 0.780
4gda BTNStreptavidin / 0.780
1lcz BH7Streptavidin / 0.774
1rxh BNIStreptavidin / 0.773
2rtg BTNStreptavidin / 0.771
1n9m BTNStreptavidin / 0.770
2rtd BTNStreptavidin / 0.759
2rte BTNStreptavidin / 0.758
3rdo BTNStreptavidin / 0.754
2c4i BTNAvidin / 0.753
2izg BTNStreptavidin / 0.750
2rtf BTNStreptavidin / 0.750
3ry2 BTNStreptavidin / 0.750
1df8 BTNStreptavidin / 0.742
1swn BTNStreptavidin / 0.742
4dne DTBStreptavidin / 0.739
2izl IMIStreptavidin / 0.738
2rtr IMIStreptavidin / 0.738
1mep BTNStreptavidin / 0.736
3wzn BTNStreptavidin / 0.736
2izh BTNStreptavidin / 0.732
3t2w BTNAvidin/streptavidin / 0.729
2rtq IMIStreptavidin / 0.728
1lcw SHMStreptavidin / 0.723
2uyw BTNAvd protein / 0.723
3rdq DTBStreptavidin / 0.721
1i9h BNIStreptavidin / 0.718
1nqm BTNStreptavidin / 0.718
1swp BTNStreptavidin / 0.717
2rtm IMIStreptavidin / 0.714
1avd BTNAvidin / 0.708
1ndj BTNStreptavidin / 0.707
2fhl BNIAvidin-related protein 4/5 / 0.705
3ew2 BTNHypothetical conserved protein / 0.703
2fhn BNIAvidin-related protein 4/5 / 0.702
4ggz BTNBll1558 protein / 0.698
4bj8 BTNAvidin / 0.695
1nc9 IMIStreptavidin / 0.692
1y52 BTNAvidin-related protein 4/5 / 0.683
4bcs BTNAvidin-related protein 4/5 / 0.677
3vhi VHIAvidin / 0.669
1swt BTNStreptavidin / 0.662
1ldq SHMAvidin / 0.660
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 0.654
2jgs BTNAvidin / 0.652