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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1stp BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1stp BTNStreptavidin / 1.018
1mk5 BTNStreptavidin / 0.939
3wyq BTNStreptavidin / 0.936
1nqm BTNStreptavidin / 0.935
3ry2 BTNStreptavidin / 0.934
2izf BTNStreptavidin / 0.929
1swr BTNStreptavidin / 0.926
4gda BTNStreptavidin / 0.926
2izh BTNStreptavidin / 0.916
4gd9 BTNStreptavidin / 0.916
2y3f BTNStreptavidin / 0.914
1swe BTNStreptavidin / 0.908
2izi BTNStreptavidin / 0.906
1n9m BTNStreptavidin / 0.898
2rtf BTNStreptavidin / 0.894
2rtg BTNStreptavidin / 0.894
3wyp BSOStreptavidin / 0.893
1lcw SHMStreptavidin / 0.892
1i9h BNIStreptavidin / 0.888
2rtd BTNStreptavidin / 0.888
4z28 BTNHoefavidin / 0.887
4yvb BTNStreptavidin / 0.886
2zsc BTNTamavidin2 / 0.884
2izg BTNStreptavidin / 0.879
1swg BTNStreptavidin / 0.878
1luq BTNStreptavidin / 0.875
1swd BTNStreptavidin / 0.872
3wzn BTNStreptavidin / 0.868
4bx7 B4FStreptavidin / 0.868
1df8 BTNStreptavidin / 0.866
4dne DTBStreptavidin / 0.863
1n43 BTNStreptavidin / 0.862
1swn BTNStreptavidin / 0.859
2uyw BTNAvd protein / 0.847
1swt BTNStreptavidin / 0.844
3rdo BTNStreptavidin / 0.839
1rxj BNIStreptavidin / 0.837
1lcz BH7Streptavidin / 0.836
1ndj BTNStreptavidin / 0.828
1swp BTNStreptavidin / 0.826
2fhl BNIAvidin-related protein 4/5 / 0.817
2rtr IMIStreptavidin / 0.815
2fhn BNIAvidin-related protein 4/5 / 0.814
2izl IMIStreptavidin / 0.810
3rdq DTBStreptavidin / 0.810
2c4i BTNAvidin / 0.804
1y52 BTNAvidin-related protein 4/5 / 0.801
3ew2 BTNHypothetical conserved protein / 0.801
2rtp IMIStreptavidin / 0.791
1nc9 IMIStreptavidin / 0.790
4bcs BTNAvidin-related protein 4/5 / 0.769
1mep BTNStreptavidin / 0.764
2jgs BTNAvidin / 0.764
2rtq IMIStreptavidin / 0.751
4bj8 BTNAvidin / 0.741
3vgw NVZAvidin / 0.736
1avd BTNAvidin / 0.734
2rtm IMIStreptavidin / 0.734
2izj BTNStreptavidin / 0.727
1ij8 BNIAvidin / 0.717
2rte BTNStreptavidin / 0.713
3vhi VHIAvidin / 0.713
1ldq SHMAvidin / 0.708
3vhm NPKAvidin / 0.699
2avi BTNAvidin / 0.696
2uz2 BTNAvd protein / 0.661