Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ses AHX Serine--tRNA ligase 6.1.1.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ses AHXSerine--tRNA ligase 6.1.1.11 1.124
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.751
3a5y KAAElongation factor P--(R)-beta-lysine ligase / 0.729
3vqv ANPPyrrolysine--tRNA ligase / 0.719
3m4p 4ADAsparaginyl-tRNA synthetase, putative / 0.693
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.672
1fyf SSAThreonine--tRNA ligase 6.1.1.3 0.671
2ydo ADNAdenosine receptor A2a / 0.666
2zt5 B4PGlycine--tRNA ligase / 0.661
3qak UKAAdenosine receptor A2a / 0.661
3vqx BLKPyrrolysine--tRNA ligase / 0.660
3tm0 ANPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.653
4ug2 NGIAdenosine receptor A2a / 0.651