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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sdw IYT Peptidyl-glycine alpha-amidating monooxygenase 1.14.17.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sdw IYTPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 1.104
1opm IYGPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.990
1fw0 KAIGlutamate receptor 2 / 0.671
1rby KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.669
4f3g KAIGlutamate receptor 3 / 0.665
1x1b SAHC-20 methyltransferase / 0.658
1njs KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.656
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.656
3au2 DGTDNA polymerase beta family (X family) / 0.655
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 0.653