sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1rkg | VD1 | Vitamin D3 receptor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1rkg | VD1 | Vitamin D3 receptor | / | 1.361 | |
| 1rjk | VDZ | Vitamin D3 receptor | / | 1.196 | |
| 1rkh | VD2 | Vitamin D3 receptor | / | 1.180 | |
| 2o4j | VD4 | Vitamin D3 receptor | / | 1.179 | |
| 3vtb | TKA | Vitamin D3 receptor | / | 1.159 | |
| 3vtc | TK3 | Vitamin D3 receptor | / | 1.152 | |
| 3vrv | YSD | Vitamin D3 receptor | / | 1.133 | |
| 2o4r | VD5 | Vitamin D3 receptor | / | 1.119 | |
| 3vrt | YS2 | Vitamin D3 receptor | / | 1.078 | |
| 4ruj | VDX | Vitamin D3 receptor A | / | 1.075 | |
| 1rk3 | VDX | Vitamin D3 receptor | / | 1.073 | |
| 3vtd | TKD | Vitamin D3 receptor | / | 1.068 | |
| 2zl9 | VDA | Vitamin D3 receptor | / | 1.054 | |
| 2zlc | VDX | Vitamin D3 receptor | / | 1.042 | |
| 1s19 | MC9 | Vitamin D3 receptor | / | 1.020 | |
| 2hb7 | O1C | Vitamin D3 receptor | / | 1.016 | |
| 4itf | TFY | Vitamin D3 receptor | / | 1.015 | |
| 3m7r | VDX | Vitamin D3 receptor | / | 1.010 | |
| 2hb8 | MVD | Vitamin D3 receptor | / | 1.009 | |
| 3kpz | ZNE | Vitamin D3 receptor | / | 1.009 | |
| 4ia1 | BIV | Vitamin D3 receptor A | / | 1.003 | |
| 1db1 | VDX | Vitamin D3 receptor | / | 1.001 | |
| 2har | OCC | Vitamin D3 receptor | / | 0.991 | |
| 2zla | VDB | Vitamin D3 receptor | / | 0.989 | |
| 3vt3 | VDX | Vitamin D3 receptor | / | 0.989 | |
| 3vt8 | YI3 | Vitamin D3 receptor | / | 0.985 | |
| 1s0z | EB1 | Vitamin D3 receptor | / | 0.983 | |
| 2ham | C33 | Vitamin D3 receptor | / | 0.977 | |
| 1ie9 | VDX | Vitamin D3 receptor | / | 0.967 | |
| 3vt5 | YI2 | Vitamin D3 receptor | / | 0.967 | |
| 3vt7 | VDX | Vitamin D3 receptor | / | 0.963 | |
| 2has | C3O | Vitamin D3 receptor | / | 0.961 | |
| 2hbh | XE4 | Vitamin D3 receptor A | / | 0.953 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.932 | |
| 1txi | TX5 | Vitamin D3 receptor | / | 0.924 | |
| 2hc4 | VDX | Vitamin D3 receptor A | / | 0.924 | |
| 3a78 | 3EV | Vitamin D3 receptor | / | 0.924 | |
| 3vt6 | 5YI | Vitamin D3 receptor | / | 0.895 | |
| 4ia7 | BIV | Vitamin D3 receptor A | / | 0.895 | |
| 3dr1 | C5D | Vitamin D3 receptor A | / | 0.893 | |
| 2hcd | BIV | Vitamin D3 receptor A | / | 0.884 | |
| 3vt9 | YI4 | Vitamin D3 receptor | / | 0.871 | |
| 4ia2 | BIV | Vitamin D3 receptor A | / | 0.854 | |
| 3vt4 | 5YI | Vitamin D3 receptor | / | 0.818 | |
| 4rup | H97 | Vitamin D3 receptor A | / | 0.773 | |
| 4ruo | BIV | Vitamin D3 receptor A | / | 0.766 | |
| 3vru | YS3 | Vitamin D3 receptor | / | 0.708 | |
| 3vrw | YS5 | Vitamin D3 receptor | / | 0.699 | |
| 4g1z | 0VP | Vitamin D3 receptor A | / | 0.680 | |
| 1s0x | C3S | Nuclear receptor ROR-alpha | / | 0.679 | |
| 2qo5 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.674 | |
| 3gki | CLR | Niemann-Pick C1 protein | / | 0.671 | |
| 1ie8 | KH1 | Vitamin D3 receptor | / | 0.666 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.661 |