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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rdw LAR Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rdw LARActin, alpha skeletal muscle / 1.169
4b1v LABActin, alpha skeletal muscle / 0.981
4h0y LARActin, alpha skeletal muscle / 0.953
4b1u LABActin, alpha skeletal muscle / 0.952
4h03 LARActin, alpha skeletal muscle / 0.920
4h0t LARActin, alpha skeletal muscle / 0.908
3sjh LARActin, alpha skeletal muscle / 0.907
2v52 LABActin, alpha skeletal muscle / 0.900
2q0u LABActin, alpha skeletal muscle / 0.888
2v51 LABActin, alpha skeletal muscle / 0.880
1esv LARActin, alpha skeletal muscle / 0.854
1sqk LARActin, alpha skeletal muscle / 0.771
4gy2 LARActin, alpha skeletal muscle / 0.757
1ijj LARActin, alpha skeletal muscle / 0.682